HL_6HA1_050

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

6HA1|1|A|C|2174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_050 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.4459

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

6HA1|1|A|C|2172
6HA1|1|A|G|2173
6HA1|1|A|C|2174
6HA1|1|A|C|2175
6HA1|1|A|A|2176
6HA1|1|A|G|2177

Current chains

Chain A

23S ribosomal RNA

Nearby chains