HL_6HA1_065

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6HA1|1|A|G|2780, 6HA1|1|A|C|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.2386

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HA1|1|A|C|2774
6HA1|1|A|U|2775
6HA1|1|A|G|2776
6HA1|1|A|A|2777
6HA1|1|A|A|2778
6HA1|1|A|A|2779
6HA1|1|A|G|2780
6HA1|1|A|C|2781
6HA1|1|A|A|2782
6HA1|1|A|U|2783
6HA1|1|A|C|2784
6HA1|1|A|U|2785
6HA1|1|A|A|2786
6HA1|1|A|A|2787
6HA1|1|A|G|2788

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13