HL_6HA1_076

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6HA1|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_076 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1266

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6HA1|1|a|G|267
6HA1|1|a|G|268
6HA1|1|a|U|269
6HA1|1|a|A|270
6HA1|1|a|A|271
6HA1|1|a|C|272
6HA1|1|a|G|273
6HA1|1|a|G|274
6HA1|1|a|C|275

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20