HL_6HA1_078

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0924

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6HA1|1|a|G|328
6HA1|1|a|A|329
6HA1|1|a|C|330
6HA1|1|a|U|331
6HA1|1|a|G|332
6HA1|1|a|A|333
6HA1|1|a|G|334
6HA1|1|a|A|335
6HA1|1|a|C|336
6HA1|1|a|A|337
6HA1|1|a|C|338
6HA1|1|a|G|339
6HA1|1|a|G|340
6HA1|1|a|C|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20