HL_6HA1_082

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6HA1|1|a|U|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_082 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2904

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6HA1|1|a|C|472
6HA1|1|a|G|473
6HA1|1|a|A|474
6HA1|1|a|A|475
6HA1|1|a|U|476
6HA1|1|a|A|477
6HA1|1|a|G|478

Current chains

Chain a

16S ribosomal RNA

Nearby chains