HL_6HA1_086

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_086 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0754

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6HA1|1|a|C|735
6HA1|1|a|G|736
6HA1|1|a|A|737
6HA1|1|a|A|738
6HA1|1|a|G|739
6HA1|1|a|G|740

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18