HL_6HA1_098

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_098 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.1185

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6HA1|1|a|C|1274
6HA1|1|a|G|1275
6HA1|1|a|C|1276
6HA1|1|a|G|1277
6HA1|1|a|A|1278
6HA1|1|a|G|1279

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19