HL_6HCF_002
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUAACACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_002 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.2106
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6HCF|1|23|C|31
6HCF|1|23|C|32
6HCF|1|23|U|33
6HCF|1|23|A|34
6HCF|1|23|A|35
6HCF|1|23|C|36
6HCF|1|23|A|37
6HCF|1|23|C|38
6HCF|1|23|G|39
Current chains
- Chain 23
- P-site tRNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain R1
- Ribosomal protein S16
- Chain j1
- eRF1(AAQ)
- Chain w3
- mRNA
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