HL_6HCF_012

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

6HCF|1|52|G|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_012 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.3467

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6HCF|1|52|G|314
6HCF|1|52|G|315
6HCF|1|52|U|316
6HCF|1|52|A|317
6HCF|1|52|A|318
6HCF|1|52|A|319
6HCF|1|52|C|320
6HCF|1|52|U|321
6HCF|1|52|C|322
6HCF|1|52|C|323

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain i3

60S ribosomal protein L36

Chain o3

eL42