HL_6HCF_017

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAGACCCGU

Length

11 nucleotides

Bulged bases

6HCF|1|52|A|966, 6HCF|1|52|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_017 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3189

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCF|1|52|G|961
6HCF|1|52|C|962
6HCF|1|52|G|963
6HCF|1|52|A|964
6HCF|1|52|G|965
6HCF|1|52|A|966
6HCF|1|52|C|967
6HCF|1|52|C|968
6HCF|1|52|C|969
6HCF|1|52|G|970
6HCF|1|52|U|971

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30