HL_6HCF_045

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_045 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5156

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HCF|1|52|G|2664
6HCF|1|52|U|2665
6HCF|1|52|U|2666
6HCF|1|52|C|2667
6HCF|1|52|G|2668
6HCF|1|52|C|2669
6HCF|1|52|C|2670

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain c3

eL30

Chain p3

eL43