HL_6HCF_046

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_046 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2348

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6HCF|1|52|G|2705
6HCF|1|52|G|2706
6HCF|1|52|U|2707
6HCF|1|52|U|2708
6HCF|1|52|C|2709
6HCF|1|52|C|2710

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain X3

uL23