HL_6HCF_053
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUUAAUUAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|52|A|3642, 6HCF|1|52|A|3643, 6HCF|1|52|U|3644, 6HCF|1|52|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_053 not in the Motif Atlas
- Geometric match to HL_7A0S_045
- Geometric discrepancy: 0.2907
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|52|G|3638
6HCF|1|52|U|3639
6HCF|1|52|U|3640
6HCF|1|52|U|3641
6HCF|1|52|A|3642
6HCF|1|52|A|3643
6HCF|1|52|U|3644
6HCF|1|52|U|3645
6HCF|1|52|A|3646
6HCF|1|52|A|3647
6HCF|1|52|A|3648
6HCF|1|52|A|3649
6HCF|1|52|C|3650
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain A3
- Ribosomal protein L8
- Chain j3
- Ribosomal protein L37
Coloring options: