HL_6HCF_089
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 6HCF|1|A1|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_089 not in the Motif Atlas
- Geometric match to HL_8GLP_091
- Geometric discrepancy: 0.1697
- The information below is about HL_8GLP_091
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6HCF|1|A1|G|377
6HCF|1|A1|U|378
6HCF|1|A1|C|379
6HCF|1|A1|G|380
6HCF|1|A1|C|381
6HCF|1|A1|C|382
6HCF|1|A1|G|383
6HCF|1|A1|U|384
6HCF|1|A1|G|385
6HCF|1|A1|C|386
6HCF|1|A1|C|387
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain J1
- eS8
- Chain M1
- Ribosomal protein S11
Coloring options: