HL_6HCF_100

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_100 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3309

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6HCF|1|A1|G|993
6HCF|1|A1|C|994
6HCF|1|A1|G|995
6HCF|1|A1|A|996
6HCF|1|A1|A|997
6HCF|1|A1|A|998
6HCF|1|A1|G|999
6HCF|1|A1|C|1000

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

uS15

Chain b1

eS26