HL_6HCF_102
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUAUUCCCAUGA
- Length
- 12 nucleotides
- Bulged bases
- 6HCF|1|A1|C|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_102 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3424
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|A1|U|1111
6HCF|1|A1|U|1112
6HCF|1|A1|A|1113
6HCF|1|A1|U|1114
6HCF|1|A1|U|1115
6HCF|1|A1|C|1116
6HCF|1|A1|C|1117
6HCF|1|A1|C|1118
6HCF|1|A1|A|1119
6HCF|1|A1|U|1120
6HCF|1|A1|G|1121
6HCF|1|A1|A|1122
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S3a
- Chain S1
- eS17
- Chain c1
- 40S ribosomal protein S27
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