HL_6HCF_117
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCGCGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6HCF|1|52|G|134, 6HCF|1|52|G|135, 6HCF|1|52|C|136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_117 not in the Motif Atlas
- Geometric match to HL_3FOZ_004
- Geometric discrepancy: 0.3429
- The information below is about HL_3FOZ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|52|C|130
6HCF|1|52|C|131
6HCF|1|52|G|132
6HCF|1|52|C|133
6HCF|1|52|G|134
6HCF|1|52|G|135
6HCF|1|52|C|136
6HCF|1|52|G|137
6HCF|1|52|G|138
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N3
- Ribosomal protein L15
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
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