HL_6HCF_126
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAUGAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_126 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.2659
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|52|G|1885
6HCF|1|52|G|1886
6HCF|1|52|G|1887
6HCF|1|52|A|1888
6HCF|1|52|U|1889
6HCF|1|52|G|1890
6HCF|1|52|A|1891
6HCF|1|52|A|1892
6HCF|1|52|C|1893
6HCF|1|52|C|1894
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 72
- 5S ribosomal RNA; 5S rRNA
- Chain F3
- uL30
- Chain e3
- eL32
- Chain f3
- eL33
Coloring options: