HL_6HCF_130

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAGUUCUCUUUUCUUU

Length

19 nucleotides

Bulged bases

6HCF|1|52|C|2627, 6HCF|1|52|U|2631, 6HCF|1|52|U|2632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_130 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3635

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6HCF|1|52|G|2619
6HCF|1|52|G|2620
6HCF|1|52|A|2621
6HCF|1|52|G|2622
6HCF|1|52|A|2623
6HCF|1|52|G|2624
6HCF|1|52|U|2625
6HCF|1|52|U|2626
6HCF|1|52|C|2627
6HCF|1|52|U|2628
6HCF|1|52|C|2629
6HCF|1|52|U|2630
6HCF|1|52|U|2631
6HCF|1|52|U|2632
6HCF|1|52|U|2633
6HCF|1|52|C|2634
6HCF|1|52|U|2635
6HCF|1|52|U|2636
6HCF|1|52|U|2637

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain g3

eL34