HL_6HCF_153
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAAACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_153 not in the Motif Atlas
- Geometric match to HL_2IL9_007
- Geometric discrepancy: 0.3286
- The information below is about HL_2IL9_007
- Detailed Annotation
- GNRA with extra near cWW
- Broad Annotation
- GNRA with extra near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
6HCF|1|A1|G|1140
6HCF|1|A1|G|1141
6HCF|1|A1|G|1142
6HCF|1|A1|A|1143
6HCF|1|A1|A|1144
6HCF|1|A1|A|1145
6HCF|1|A1|C|1146
6HCF|1|A1|C|1147
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain D1
- uS5
- Chain W1
- eS21
- Chain X1
- Ribosomal protein S15a
- Chain b1
- eS26
Coloring options: