HL_6HCF_167

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6HCF|1|52|U|2530, 6HCF|1|52|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_167 not in the Motif Atlas

Homologous match to HL_8CRE_034

Geometric discrepancy: 0.2409

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HCF|1|52|G|2523
6HCF|1|52|U|2524
6HCF|1|52|U|2525
6HCF|1|52|C|2526
6HCF|1|52|A|2527
6HCF|1|52|G|2528
6HCF|1|52|A|2529
6HCF|1|52|U|2530
6HCF|1|52|C|2531
6HCF|1|52|C|2532

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain X3

uL23

Chain g3

eL34