HL_6HCF_175
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_175 not in the Motif Atlas
- Homologous match to HL_8OI5_068
- Geometric discrepancy: 0.21
- The information below is about HL_8OI5_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HCF|1|72|A|32
6HCF|1|72|U|33
6HCF|1|72|C|34
6HCF|1|72|U|35
6HCF|1|72|C|36
6HCF|1|72|G|37
6HCF|1|72|U|38
6HCF|1|72|C|39
6HCF|1|72|U|40
6HCF|1|72|G|41
6HCF|1|72|A|42
6HCF|1|72|U|43
6HCF|1|72|C|44
6HCF|1|72|U|45
Current chains
- Chain 72
- 5S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain J3
- Ribosomal protein L11
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