HL_6HCJ_011
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUUGGGAAUGC
- Length
- 12 nucleotides
- Bulged bases
- 6HCJ|1|51|G|294, 6HCJ|1|51|A|295, 6HCJ|1|51|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_011 not in the Motif Atlas
- Geometric match to HL_3SKL_006
- Geometric discrepancy: 0.3226
- The information below is about HL_3SKL_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HCJ|1|51|G|288
6HCJ|1|51|C|289
6HCJ|1|51|U|290
6HCJ|1|51|U|291
6HCJ|1|51|G|292
6HCJ|1|51|G|293
6HCJ|1|51|G|294
6HCJ|1|51|A|295
6HCJ|1|51|A|296
6HCJ|1|51|U|297
6HCJ|1|51|G|298
6HCJ|1|51|C|299
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain o3
- eL42
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