HL_6HCJ_019

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_019 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1855

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6HCJ|1|51|G|1178
6HCJ|1|51|U|1179
6HCJ|1|51|C|1180
6HCJ|1|51|C|1181
6HCJ|1|51|C|1182
6HCJ|1|51|C|1183

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10