HL_6HCJ_028

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6HCJ|1|51|C|1676, 6HCJ|1|51|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_028 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.3258

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6HCJ|1|51|C|1675
6HCJ|1|51|C|1676
6HCJ|1|51|U|1677
6HCJ|1|51|C|1678
6HCJ|1|51|A|1679
6HCJ|1|51|G|1680

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain a3

uL15

Chain b3

eL29

Chain o3

eL42