HL_6HCJ_037

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6HCJ|1|51|G|2421, 6HCJ|1|51|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_037 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2516

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6HCJ|1|51|A|2420
6HCJ|1|51|G|2421
6HCJ|1|51|C|2422
6HCJ|1|51|A|2423
6HCJ|1|51|G|2424
6HCJ|1|51|U|2425
6HCJ|1|51|U|2426

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain l3

eL39