HL_6HCJ_043

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6HCJ|1|51|C|2627, 6HCJ|1|51|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_043 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.2516

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCJ|1|51|G|2624
6HCJ|1|51|U|2625
6HCJ|1|51|U|2626
6HCJ|1|51|C|2627
6HCJ|1|51|U|2628
6HCJ|1|51|C|2629
6HCJ|1|51|U|2630
6HCJ|1|51|U|2631
6HCJ|1|51|U|2632

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22