HL_6HCJ_052

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAGAAAUU

Length

8 nucleotides

Bulged bases

6HCJ|1|51|A|3726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_052 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.2669

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6HCJ|1|51|A|3723
6HCJ|1|51|A|3724
6HCJ|1|51|G|3725
6HCJ|1|51|A|3726
6HCJ|1|51|A|3727
6HCJ|1|51|A|3728
6HCJ|1|51|U|3729
6HCJ|1|51|U|3730

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain i3

60S ribosomal protein L36

Chain o3

eL42

Chain w3

uL1