HL_6HCJ_055

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6HCJ|1|51|A|3876, 6HCJ|1|51|A|3877, 6HCJ|1|51|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_055 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.2351

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6HCJ|1|51|G|3873
6HCJ|1|51|G|3874
6HCJ|1|51|G|3875
6HCJ|1|51|A|3876
6HCJ|1|51|A|3877
6HCJ|1|51|C|3878
6HCJ|1|51|G|3879
6HCJ|1|51|G|3880
6HCJ|1|51|G|3881
6HCJ|1|51|C|3882

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain e3

eL32