HL_6HCJ_066

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6HCJ|1|51|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_066 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2688

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6HCJ|1|51|A|4474
6HCJ|1|51|G|4475
6HCJ|1|51|C|4476
6HCJ|1|51|A|4477
6HCJ|1|51|G|4478
6HCJ|1|51|A|4479
6HCJ|1|51|A|4480
6HCJ|1|51|U|4481

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain m3

eL40