HL_6HCJ_069

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_069 not in the Motif Atlas

Geometric match to HL_5J7L_004

Geometric discrepancy: 0.1632

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6HCJ|1|51|C|4603
6HCJ|1|51|G|4604
6HCJ|1|51|A|4605
6HCJ|1|51|G|4606
6HCJ|1|51|A|4607
6HCJ|1|51|G|4608

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain m3

eL40