HL_6HCJ_070

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_070 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.2549

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6HCJ|1|51|U|4646
6HCJ|1|51|G|4647
6HCJ|1|51|A|4648
6HCJ|1|51|G|4649
6HCJ|1|51|G|4650
6HCJ|1|51|A|4651

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain d3

eL31