HL_6HCJ_081

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6HCJ|1|81|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_081 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.3795

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HCJ|1|81|G|121
6HCJ|1|81|G|122
6HCJ|1|81|U|123
6HCJ|1|81|U|124
6HCJ|1|81|C|125
6HCJ|1|81|C|126
6HCJ|1|81|U|127
6HCJ|1|81|C|128
6HCJ|1|81|C|129

Current chains

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain X3

uL23