HL_6HCJ_084

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6HCJ|1|A2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_084 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2708

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6HCJ|1|A2|G|156
6HCJ|1|A2|U|157
6HCJ|1|A2|A|158
6HCJ|1|A2|A|159
6HCJ|1|A2|U|160
6HCJ|1|A2|U|161
6HCJ|1|A2|C|162

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain Z2

eS24