HL_6HCJ_091

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6HCJ|1|A2|A|448, 6HCJ|1|A2|C|450, 6HCJ|1|A2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_091 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.2066

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HCJ|1|A2|C|441
6HCJ|1|A2|C|442
6HCJ|1|A2|U|443
6HCJ|1|A2|G|444
6HCJ|1|A2|A|445
6HCJ|1|A2|G|446
6HCJ|1|A2|A|447
6HCJ|1|A2|A|448
6HCJ|1|A2|A|449
6HCJ|1|A2|C|450
6HCJ|1|A2|G|451
6HCJ|1|A2|G|452

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain H2

40S ribosomal protein S6

Chain J2

eS8

Chain Z2

eS24