HL_6HCJ_093

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6HCJ|1|A2|A|500, 6HCJ|1|A2|C|502, 6HCJ|1|A2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_093 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.4377

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCJ|1|A2|C|498
6HCJ|1|A2|G|499
6HCJ|1|A2|A|500
6HCJ|1|A2|C|501
6HCJ|1|A2|C|502
6HCJ|1|A2|C|503
6HCJ|1|A2|G|504

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain Z2

eS24