HL_6HCJ_096

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_096 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.2491

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCJ|1|A2|C|618
6HCJ|1|A2|A|619
6HCJ|1|A2|G|620
6HCJ|1|A2|C|621
6HCJ|1|A2|C|622
6HCJ|1|A2|G|623

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain Y2

uS12

Chain v3

mRNA