HL_6HCJ_098

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAUUUUGUUGGUUUUCGGA

Length

21 nucleotides

Bulged bases

6HCJ|1|A2|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_098 not in the Motif Atlas

Geometric match to HL_5D5L_002

Geometric discrepancy: 0.3905

The information below is about HL_5D5L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6HCJ|1|A2|U|883
6HCJ|1|A2|C|884
6HCJ|1|A2|U|885
6HCJ|1|A2|A|886
6HCJ|1|A2|U|887
6HCJ|1|A2|U|888
6HCJ|1|A2|U|889
6HCJ|1|A2|U|890
6HCJ|1|A2|G|891
6HCJ|1|A2|U|892
6HCJ|1|A2|U|893
6HCJ|1|A2|G|894
6HCJ|1|A2|G|895
6HCJ|1|A2|U|896
6HCJ|1|A2|U|897
6HCJ|1|A2|U|898
6HCJ|1|A2|U|899
6HCJ|1|A2|C|900
6HCJ|1|A2|G|901
6HCJ|1|A2|G|902
6HCJ|1|A2|A|903

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain M2

Ribosomal protein S11