HL_6HCJ_099
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_099 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2105
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6HCJ|1|A2|A|957
6HCJ|1|A2|G|958
6HCJ|1|A2|G|959
6HCJ|1|A2|U|960
6HCJ|1|A2|G|961
6HCJ|1|A2|A|962
6HCJ|1|A2|A|963
6HCJ|1|A2|A|964
6HCJ|1|A2|U|965
6HCJ|1|A2|U|966
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain G2
- Ribosomal protein S5
- Chain P2
- uS11
- Chain b2
- eS26
- Chain v3
- mRNA
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