HL_6HCJ_101
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_101 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2507
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6HCJ|1|A2|G|1054
6HCJ|1|A2|A|1055
6HCJ|1|A2|U|1056
6HCJ|1|A2|C|1057
6HCJ|1|A2|A|1058
6HCJ|1|A2|G|1059
6HCJ|1|A2|A|1060
6HCJ|1|A2|U|1061
6HCJ|1|A2|A|1062
6HCJ|1|A2|C|1063
6HCJ|1|A2|C|1064
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain P2
- uS11
- Chain b2
- eS26
- Chain v3
- mRNA
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