HL_6HCJ_124

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUGAAGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_124 not in the Motif Atlas

Geometric match to HL_5J7L_216

Geometric discrepancy: 0.394

The information below is about HL_5J7L_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78284.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6HCJ|1|51|C|390
6HCJ|1|51|U|391
6HCJ|1|51|U|392
6HCJ|1|51|U|393
6HCJ|1|51|G|394
6HCJ|1|51|A|395
6HCJ|1|51|A|396
6HCJ|1|51|G|397
6HCJ|1|51|A|398
6HCJ|1|51|G|399
6HCJ|1|51|A|400
6HCJ|1|51|G|401

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain Y3

Ribosomal protein L26