HL_6HCJ_135

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUCUAAUUAGUG

Length

13 nucleotides

Bulged bases

6HCJ|1|51|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_135 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.391

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6HCJ|1|51|C|3794
6HCJ|1|51|A|3795
6HCJ|1|51|U|3796
6HCJ|1|51|C|3797
6HCJ|1|51|U|3798
6HCJ|1|51|A|3799
6HCJ|1|51|A|3800
6HCJ|1|51|U|3801
6HCJ|1|51|U|3802
6HCJ|1|51|A|3803
6HCJ|1|51|G|3804
6HCJ|1|51|U|3805
6HCJ|1|51|G|3806

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain V3

Ribosomal protein L23

Chain n3

eL41