HL_6HCM_010

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

6HCM|1|52|G|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_010 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.2523

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6HCM|1|52|G|230
6HCM|1|52|U|231
6HCM|1|52|G|232
6HCM|1|52|U|233
6HCM|1|52|G|234
6HCM|1|52|A|235
6HCM|1|52|G|236
6HCM|1|52|G|237
6HCM|1|52|C|238

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26