HL_6HCM_017

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCGAGACCCGU

Length

11 nucleotides

Bulged bases

6HCM|1|52|A|966, 6HCM|1|52|C|967

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_017 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.319

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCM|1|52|G|961
6HCM|1|52|C|962
6HCM|1|52|G|963
6HCM|1|52|A|964
6HCM|1|52|G|965
6HCM|1|52|A|966
6HCM|1|52|C|967
6HCM|1|52|C|968
6HCM|1|52|C|969
6HCM|1|52|G|970
6HCM|1|52|U|971

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30