HL_6HCM_018

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_018 not in the Motif Atlas

Geometric match to HL_3V7E_003

Geometric discrepancy: 0.2809

The information below is about HL_3V7E_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6HCM|1|52|G|1178
6HCM|1|52|U|1179
6HCM|1|52|C|1180
6HCM|1|52|C|1181
6HCM|1|52|C|1182
6HCM|1|52|C|1183

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10