HL_6HCM_019

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

6HCM|1|52|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_019 not in the Motif Atlas

Geometric match to HL_4TUE_218

Geometric discrepancy: 0.3847

The information below is about HL_4TUE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HCM|1|52|G|1316
6HCM|1|52|U|1317
6HCM|1|52|C|1318
6HCM|1|52|U|1319
6HCM|1|52|U|1320
6HCM|1|52|G|1321
6HCM|1|52|A|1322
6HCM|1|52|A|1323
6HCM|1|52|A|1324
6HCM|1|52|C|1325
6HCM|1|52|A|1326
6HCM|1|52|C|1327

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32