HL_6HCM_021

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_021 not in the Motif Atlas

Homologous match to HL_5TBW_016

Geometric discrepancy: 0.1644

The information below is about HL_5TBW_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCM|1|52|U|1389
6HCM|1|52|G|1390
6HCM|1|52|A|1391
6HCM|1|52|A|1392
6HCM|1|52|G|1393
6HCM|1|52|G|1394

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain Q3

eL18

Chain a3

uL15

Chain i3

60S ribosomal protein L36