HL_6HCM_028

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6HCM|1|52|C|1676, 6HCM|1|52|A|1679

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_028 not in the Motif Atlas

Geometric match to HL_4V9F_026

Geometric discrepancy: 0.3681

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

6HCM|1|52|C|1675
6HCM|1|52|C|1676
6HCM|1|52|U|1677
6HCM|1|52|C|1678
6HCM|1|52|A|1679
6HCM|1|52|G|1680

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain a3

uL15

Chain b3

eL29

Chain o3

eL42