HL_6HCM_033

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6HCM|1|52|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_033 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3024

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6HCM|1|52|C|1978
6HCM|1|52|A|1979
6HCM|1|52|U|1980
6HCM|1|52|G|1981
6HCM|1|52|G|1982
6HCM|1|52|A|1983
6HCM|1|52|A|1984
6HCM|1|52|G|1985
6HCM|1|52|U|1986
6HCM|1|52|C|1987
6HCM|1|52|G|1988

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain j1

eRF1(AAQ)

Chain t3

Ribosomal protein L12