HL_6HCM_044

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAGUUCUCUUUUC

Length

13 nucleotides

Bulged bases

6HCM|1|52|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_044 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3748

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6HCM|1|52|G|2622
6HCM|1|52|A|2623
6HCM|1|52|G|2624
6HCM|1|52|U|2625
6HCM|1|52|U|2626
6HCM|1|52|C|2627
6HCM|1|52|U|2628
6HCM|1|52|C|2629
6HCM|1|52|U|2630
6HCM|1|52|U|2631
6HCM|1|52|U|2632
6HCM|1|52|U|2633
6HCM|1|52|C|2634

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22